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SRX365776: Transcriptome analysis of Pinus monticola primary needles by RNA-seq provides novel insight into host resistance to Cronartium ribicola
1 ILLUMINA (Illumina Genome Analyzer II) run: 74.6M spots, 11.3G bases, 5.8Gb downloads

Design: cDNA libraries were constructed from pooled tissues of several seedlings at BC Cancer Agency using Illumina's protocols.
Submitted by: Natural Resources Canada
Study: Transcriptome analysis on the white pine-blister rust interactions
show Abstracthide Abstract
The invasive fungus Cronartium ribicola causes white pine blister rust (WPBR), the most destructive disease affecting native five-needle pines in North America. Phenotype-based selection of genetic resistance currently used in conifer breeding programs is a long-term, high cost process. Genotype-based or genomic selection would provide a more effective breeding strategy. This project uses a combed approach of RNA-Seq analysis and high-throughput SNP genotyping technologies to discover functional SNP markers for breeding selection of a desirable trait without phenotyping in western white pine, limber pine, whitebark pine, and other five-needle pines.
Sample: Generic sample from Pinus monticola
SAMN02376801 • SRS492183 • All experiments • All runs
Organism: Pinus monticola
Library:
Name: PN (Cr2/-)_4-dpi
Instrument: Illumina Genome Analyzer II
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: unspecified
Layout: PAIRED
Spot descriptor:
forward77  reverse

Runs: 1 run, 74.6M spots, 11.3G bases, 5.8Gb
Run# of Spots# of BasesSizePublished
SRR101383674,622,03211.3G5.8Gb2014-03-07

ID:
522875

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